Book chapters:
Gomes D. G. E., Brumm H., and Horn A. (2025). Noise pollution and conservation. Encyclopedia of animal behavior, 1-9.
Peer-reviewed articles:
I. C. Kaplan, E. L. Hazen, S. Koenigstein, N. L. Ochoa, M. H. Cruz, P. Hernvann, Owen R Liu, D. G. E. Gomes, S. I. Vásquez, C. Lujan, S. Green, M. R. Baker, R. Oliveros-Ramos, A. Rovellini, R. G. Asch, and B. Muhling. (2026). The devil’s in the details when using correlative and mechanistic species distribution models to inform multispecies and ecosystem model. Canadian Journal of Fisheries and Aquatic Sciences.
Brodeur R. D., Gomes D. G. E., Draper D. L., Daly E. A., Zeman S. M., Galbraith M., Perry R. I., Ruzicka J. J., Robertson R. R. (2026). The Northern California Current on fire: consequences of a widespread and persistent anomalous pyrosome bloom. Progress in Oceanography, 103741.
Pick, J. L., Ivimey Cook, E. R., Allen, B. J., Bachelot, B., Brand, J. A., Class, B., Dallas, T., D'Amelio, P. B., Fernández-Juricic, E., Guillemaud, T., Gomes, D. G. E., John, C., Lequime, S., Nakagawa, S., O'Dea, R. E., Petitjean, Q., Sánchez-Tójar, A., Wilson, L. A. B. (2026). The SORTEE Guidelines for Data and Code Quality Control in Ecology and Evolutionary Biology. Peer Community Journal.
Wells, B. K., Huff, D. D., Quinn, T. P., Santora, J. A., Gomes, D. G. E., Vasbinder, K., Barnas, K. A., Burke, B. J., Courtney, M. B., Crozier, L. G., Fiechter, J., Friedland, K. D., Hayes, S. A., Hunsicker, M. E., Juanes, F., Mantua, N. J., Michel, C. J., Phillips, E. M., Sanderson, B. L., Satterthwaite, W. H., Seitz, A. C., Sheehan, T. F., Stewart, J. D., & Trudel, M. (2025). When, Where, and Why Salmon Become Vulnerable to Predation. ICES Journal of Marine Science. 82(9): fsaf162.
Gomes D. G. E., Benjamin J. R., Clemens B. J., Lampman R., Dunham J. B. (2025). New technology for an ancient fish: A lamprey life cycle modeling tool with an R Shiny application. PLOS ONE. Shiny app: https://rconnect.usgs.gov/LampreyLCM/
J. L. Sedlock, M. L. P. Almazan, B. A. R. Hadi, D. G. E. Gomes, and J. R. Barber. (2025). Dispersing rice-associated arthropods ignore a phantom ultrasonic insect chorus. The Open Agriculture Journal.
Crozier L. G., Gomes D. G. E., Huff D. D. (2025). Climate change and marine food webs: navigating structural uncertainty using qualitative network analysis with insights for salmon survival. Global Change Biology. 31:e70143
Gould E., Fraser H. S., Parker T. H., Nakagawa S., Griffith S. C., Vesk P. A, Fidler F., Hamilton D. G., …, Gomes D. G. E., … [294 unlisted authors] (2025). Same data, different analysts: variation in effect sizes due to analytical decisions in ecology and evolutionary biology. BMC Biology. 23(35).
Gomes D. G. E. (2025). How will we prepare for an uncertain future? The value of open data and code for unborn generations facing climate change. Proceedings of the Royal Society B: Biological Sciences. 292(2040), 20241515.
M. Lagisz, K. R. Bairos-Novak, A. R. Martinig, M. Bertram, A. Mizuno, S. S. Sabet, M. Paquet, M. S. Santana, E. Thoré, N. Trubanová, J. Rutkowska, J. A. Orr, E. Takola, Y. Yang, P. Pottier, D. G. E. Gomes, Y.-C. Chan, Z. Xian, C. O. Akogwu, S. M. Drobniak, S. Nakagawa. (2025). Priced out of belonging? Insufficient concessions on membership fees across international societies in ecology and evolution. Proceedings of the Royal Society B: Biological Sciences. 292:20241430.
Corsini M., Cole H. J., Gomes D. G. E., Fristrup K. M., Barber J. R. (2025). Red lighting partially mitigates the cost of light pollution for arthropods. Oecologica. 207(1), 26.
Crozier L. G., Gomes D. G. E., Axel G. (2024). Will salmon disappear in a warming world? Climanosco Research Articles 4, 18 Nov 2024, https://doi.org/10.37207/CRA.4.1
Gomes D. G. E., Ruzicka J. J., Crozier L. G., Huff D. D., Brodeur R. D., Stewart J. D. (2024). Marine heatwaves disrupt ecosystem structure and function via altered food webs and energy flux. Nature Communications. Data & Code BioRxiv Pre-print
Gomes D. G. E., Ruzicka J. J., Crozier L. G., Huff D. D., Phillips E. M., Hernvann P.-Y., Morgan C. A., Brodeur R. D., Zamon J. E., Daly E. A., Bizzarro J., Fisher J. L., Auth T. D. (2024). An updated end-to-end ecosystem model of the Northern California Current reflecting ecosystem changes due to recent marine heat waves. PLOS ONE. Data & Code. Currently: BioRxiv Pre-print: https://www.biorxiv.org/content/10.1101/2022.12.28.522165v1
Braga P. H. P., Hébert K., Hudgins E. J., Scott E. R., Edwards B., Sánchez-Reyes L. L., Grainger M. J., Foroughirad V., Hilleman F., Binley A. D., Brookson C. B., Gaynor K. M., Sabet S. S., Güncan A., Weierbach H., Gomes D. G. E., Crystal-Ornelas R. (2023). Not just for programmers: How GitHub can accelerate collaborative and reproducible research in ecology and evolution. Methods in Ecology and Evolution. 00: 1-17. Code
Arrington, D.A., Harris R.J., Layman C.A., Gomes D.G.E. (2023). Leveraging Green Infrastructure for Efficient Treatment of Reclaimed Water. Science of the Total Environment (STOTEN). Data & Code
Cole H. J., Gomes D. G. E., Barber J. R. (2022). Bats in National Parks: An analysis framework and case study for understanding bat habitat use in protected areas. PeerJ. 10:e14509. Data & Code Article Vignette
Gomes D.G.E., Pottier P., Crystal-Ornelas R., Hudgins E.J., Foroughirad V., Sánchez-Reyes L.L., Turba R., Martinez P.A., Moreau D., Bertram M., Smout C., Gaynor K. M. (2022). Why don’t we share data and code? Perceived barriers and benefits to public archiving practices. Proceedings of the Royal Society B. Article
Reed V., Toth C. A., Wardle R., Gomes D. G. E., Barber J. R., Francis C. D. (2022). Experimentally broadcast ocean surf and river noise alters birdsong structure. PeerJ. Article Data
Gomes D. G. E. (2022). Should I use fixed effects or random effects when I have fewer than five levels of a grouping factor in a mixed-effects model? PeerJ. Article Data & Code
Sweet K. A., Sweet B. P., Gomes D. G. E., Francis C. D., Barber J. R. (2021). Natural and anthropogenic noise increase vigilance behaviors in song sparrows (Melospiza melodia). Behavioral Ecology. PDF Data & Code
Takoukam A. K., Gomes D. G. E., Beck C. A., Keith-Diagne L. W., Hunter M. E., Francis-Floyd R., Bonde R. K. (2021). Diet composition of the African manatee: spatial and temporal variation within the Sanaga River Watershed, Cameroon. Ecology and Evolution. PDF Data & Code
Sedlock J., Gomes D. G. E., Rubin J., Woody S., Hadi B., Barber J. R. (2021). A phantom ultrasonic insect chorus repels low-flying bats, but most are undeterred. Functional Ecology. PDF Data & Code
Takoukam A. K., Gomes D. G. E., Hoyer M. V., Keith-Diagne L. W., Bonde R. K., Francis-Floyd R. (2021). African manatee (Trichechus senegalensis) habitat suitability at Lake Ossa, Cameroon, using trophic state models and predictions of submerged aquatic vegetation. Ecology and Evolution. 00, 1-13. PDF Data & Code
Gomes D. G. E., Toth C. A., Bateman C. C., Francis C. D., Kawahara A. Y., Barber J. R. (2021). Experimental river noise alters arthropod abundance. Oikos. PDF Data & Code
Reed V., Toth C. A., Wardle R., Gomes D. G. E., Barber J. R., Francis C. D. (2021). Natural Noise Affects Conspecific Signal Detection and Territorial Defense Behaviors in Songbirds. Behavioral Ecology. PDF Data & Code
Gomes D. G. E., Toth C. A., Cole H. J., Francis C. D., Barber J. R. (2021). Phantom rivers filter birds and bats by acoustic niche. Nature Communications. Data & Code PDF
Gomes D. G. E., Francis C. D., Barber J. R. (2021). Using Past to Understand Present: Coping with Natural and Anthropogenic Noise. BioScience. PDF
Gomes D. G. E., Hesselberg T., Barber J. R. (2021). Phantom river noise alters orb-weaving spider abundance, web size, and prey capture. Functional Ecology. Data & Code PDF
Gomes D. G. E., Goerlitz H. (2020). Individual differences show that only some bats can cope with noise-induced masking and distraction. PeerJ. 8:e10551. Data & Code PDF
Gomes D. G. E., Giulliana A., Barber J. R. (2020). Time of night and moonlight structure vertical space use by insectivorous bats in a Neotropical rainforest: an acoustic monitoring study. PeerJ. 8:e10591. Data & Code PDF
Levenhagen M., Miller Z., Petrelli A., Ferguson L., Shr Y.H., Gomes D., Taff D., White C., Fristrup K., Monz C., McClure C., Newman P., Francis C., Barber J. (2020) Ecosystem services enhanced through soundscape management link people and wildlife. People and Nature. PDF
Gomes, D. G. E. (2020). Orb-weaving spiders are fewer but larger and catch more prey in lit bridge panels from a natural artificial light experiment. PeerJ, 8, e8808. PDF Data & Code
Gomes, D. G. E., Halfwerk, W., Taylor, R. C., Ryan, M. J., & Page, R. A. (2017). Multimodal weighting differences by bats and their prey: probing natural selection pressures on sexually selected traits. Animal Behaviour. PDF Data & Code
Gomes, D. G. E., Page, R. A., Geipel, I., Taylor, R. C., Ryan, M. J., & Halfwerk, W. (2016). Bats perceptually weight prey cues across sensory systems when hunting in noise. Science, 353(6305), 1277-1280. PDF Data & Code